TRAF1 (Homo sapiens)
Description [+]
- Synonyms: TRAF1, EBI6
- Species: Metazoa;Bilateria;Deuterostoma;Chordata;Vertebrata;Mammalia;Primates;Hominidae; Homo sapiens
- Short gene description: TNF receptor-associated factor 1 (Epstein-Barr virus-induced protein 6) [Source:UniProtKB/Swiss-Prot;Acc:Q13077]
- Family: other
- Process: immunity,
- Pathways: TNF/NF-kappaB signaling,
- Criteria: manually curated
- Curator comment:
- Mouse ortholog(s): Traf1
- WIKI: TRAF1-H_sapiens
References [+]
- A novel family of putative signal transducers associated with the cytoplasmic domain of the 75 kDa tumor necrosis factor receptor.
- Rothe M, Wong SC, Henzel WJ, Goeddel DV
- Mutational analysis identified a C-terminal region of 78 amino acids within the cytoplasmic domain of the human 75 kDa tumor necrosis factor receptor (TNF-R2) that is required for signal transduction. This region was subsequently shown to mediate the interaction of cytoplasmic factors with TNF-R2. Two of these factors were isolated and molecularly cloned using biochemical purification and the yeast two-hybrid system. TNF receptor-associated factor 1 (TRAF1) and TRAF2 are the first two members of a novel protein family containing a novel C-terminal homology region, the TRAF domain. In addition, TRAF2 contains an N-terminal RING finger motif. TRAF1 and TRAF2 can form homo- and heterotypic dimers. Our analysis indicates that TRAF1 and TRAF2 are associated with the cytoplasmic domain of TNF-R2 in a heterodimeric complex in which TRAF2 contacts the receptor directly. TRAF1 interacts with TNF-R2 indirectly through heterodimer formation with TRAF2. Cell. 1994 Aug 26;78(4):681-92.
Structure & Sequence [+]
Pfam domains:
(Pfam is a large collection of protein families.)
| Source | Domain Name | Start | End |
|---|---|---|---|
| PFAM A | MATH | 273 | 414 |
Protein sequence [+]
TRAF1 | Homo sapiens | 9606 | length:416
MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGEDQICPKCRGE
DLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQSVQEHEVTSQTSHLNLLL
GFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQEELALQH
FMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ
QTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAK
YGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID
AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETST
DLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQSVQEHEVTSQTSHLNLLL
GFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQEELALQH
FMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ
QTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAK
YGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID
AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETST
Structure links:
Evolution [+]
View protein alignment and tree with Jalview:
Explore tree at phylomeDB: Click here.
Homologs list [+]
| Name | Relationship | Species |
|---|---|---|
| TRAF1 | orthology | Chicken |
| TRAF1 | orthology | Chimpanzee |
| IPI00843279.1 | orthology | Cow |
| TRAF1 | orthology | Dog |
| TRAF1 | orthology | Gorilla |
| TRAF1 | orthology | Horse |
| A_carolinensis_ENSACAP00000010321 | orthology | Lyzard |
| TRAF1 | orthology | Macaca |
| TRAF1 | orthology | Monodelphis |
| Traf1 | orthology | Mouse |
| Q5RAE4_PONPY | orthology | Orangutan |
| TRAF1 | orthology | Ornithorhynchus |
| TRAF1 | orthology | Rabbit |
| TRAF1 | orthology | Xenopus |
| TRAF1 | orthology | Zebra finch |
| TRAF1 | orthology | Zebrafish |
| A_aegypti_AAEL006649-PA | paralogy | Aedes |
| A_aegypti_AAEL011363-PA | paralogy | Aedes |
| A_aegypti_AAEL015342-PA | paralogy | Aedes |
| A_gambiae_AGAP000388-PA | paralogy | Anopheles |
| A_gambiae_AGAP003004-PA | paralogy | Anopheles |
| A_gambiae_AGAP010017-PA | paralogy | Anopheles |
| TRAF6 | paralogy | Chicken |
| TRAF2 | paralogy | Chicken |
| NP_989550.1 | paralogy | Chicken |
| TRAF3 | paralogy | Chicken |
| TRAF5 | paralogy | Chimpanzee |
| TRAF6 | paralogy | Chimpanzee |
| TRAF3 | paralogy | Chimpanzee |
| TRAF4 | paralogy | Chimpanzee |
| TRAF2 | paralogy | Chimpanzee |
| C_intestinalis_ENSCINP00000001022 | paralogy | Ciona |
| C_intestinalis_ENSCINP00000001432 | paralogy | Ciona |
| C_intestinalis_ENSCINP00000003143 | paralogy | Ciona |
| C_intestinalis_ENSCINP00000003738 | paralogy | Ciona |
| C_intestinalis_ENSCINP00000005981 | paralogy | Ciona |
| C_intestinalis_ENSCINP00000025605 | paralogy | Ciona |
| C_intestinalis_ENSCINP00000027041 | paralogy | Ciona |
| C_intestinalis_ENSCINP00000027890 | paralogy | Ciona |
| TRAF2 | paralogy | Cow |
| NP_001098810.1 | paralogy | Cow |
| LOC783305 | paralogy | Cow |
| IPI00716910.2 | paralogy | Cow |
| NP_001029833.1 | paralogy | Cow |
| NP_001094750.1 | paralogy | Cow |
| TRAF6 | paralogy | Dog |
| TRAF5 | paralogy | Dog |
| TRAF3 | paralogy | Dog |
| TRAF2 | paralogy | Dog |
| Traf2 | paralogy | Fly |
| Traf3 | paralogy | Fly |
| Traf1 | paralogy | Fly |
| TRAF2 (2 of 2) | paralogy | Fugu |
| TRAF4 | paralogy | Fugu |
| TRAF3 | paralogy | Fugu |
| TRAF2 (1 of 2) | paralogy | Fugu |
| TRAF6 | paralogy | Fugu |
| T_rubripes_ENSTRUP00000047803 | paralogy | Fugu |
| TRAF5 | paralogy | Gasterosteus |
| TRAF3 | paralogy | Gasterosteus |
| TRAF2 (2 of 2) | paralogy | Gasterosteus |
| TRAF4 | paralogy | Gasterosteus |
| TRAF2 (1 of 2) | paralogy | Gasterosteus |
| G_aculeatus_ENSGACP00000022084 | paralogy | Gasterosteus |
| TRAF6 | paralogy | Gasterosteus |
| TRAF3 | paralogy | Gorilla |
| TRAF6 | paralogy | Gorilla |
| TRAF2 | paralogy | Gorilla |
| TRAF4 | paralogy | Gorilla |
| TRAF5 | paralogy | Horse |
| TRAF4 | paralogy | Horse |
| TRAF2 | paralogy | Horse |
| TRAF3 | paralogy | Horse |
| TRAF6 | paralogy | Horse |
| TRAF2 | paralogy | Human |
| TRAF4 | paralogy | Human |
| TRAF6 | paralogy | Human |
| TRAF5 | paralogy | Human |
| TRAF3 | paralogy | Human |
| TRAF3 | paralogy | Lyzard |
| TRAF6 | paralogy | Lyzard |
| TRAF5 | paralogy | Lyzard |
| A_carolinensis_ENSACAP00000017068 | paralogy | Lyzard |
| MEP1B | paralogy | Lyzard |
| TRAF2 | paralogy | Macaca |
| TRAF3 | paralogy | Macaca |
| M_mulatta_ENSMMUP00000021905 | paralogy | Macaca |
| M_mulatta_ENSMMUP00000021907 | paralogy | Macaca |
| M_mulatta_ENSMMUP00000022296 | paralogy | Macaca |
| TRAF4 | paralogy | Macaca |
| TRAF5 | paralogy | Macaca |
| TRAF6 | paralogy | Medaka |
| TRAF5 | paralogy | Medaka |
| TRAF2 (1 of 2) | paralogy | Medaka |
| TRAF4 | paralogy | Medaka |
| O_latipes_ENSORLP00000008989 | paralogy | Medaka |
| TRAF2 (2 of 2) | paralogy | Medaka |
| TRAF5 | paralogy | Monodelphis |
| TRAF3 | paralogy | Monodelphis |
| TRAF2 | paralogy | Monodelphis |
| TRAF4 | paralogy | Monodelphis |
| TRAF6 | paralogy | Monodelphis |
| Traf3 | paralogy | Mouse |
| Traf5 | paralogy | Mouse |
| Traf2 | paralogy | Mouse |
| Traf6 | paralogy | Mouse |
| Traf4 | paralogy | Mouse |
| TRAF5 | paralogy | Orangutan |
| TRAF6 | paralogy | Orangutan |
| TRAF3 | paralogy | Orangutan |
| TRAF4 | paralogy | Orangutan |
| TRAF2 | paralogy | Orangutan |
| TRAF5 | paralogy | Ornithorhynchus |
| TRAF6 | paralogy | Ornithorhynchus |
| TRAF4 | paralogy | Ornithorhynchus |
| TRAF3 | paralogy | Ornithorhynchus |
| TRAF3 | paralogy | Rabbit |
| TRAF5 | paralogy | Rabbit |
| TRAF6 | paralogy | Rabbit |
| Traf3_predicted | paralogy | Rat |
| NP_001100487.1 | paralogy | Rat |
| Traf2_predicted | paralogy | Rat |
| NP_001101224.1 | paralogy | Rat |
| TRAF3 | paralogy | Tetraodon |
| T_nigroviridis_ENSTNIP00000011878 | paralogy | Tetraodon |
| TRAF6 | paralogy | Tetraodon |
| TRAF2 (2 of 2) | paralogy | Tetraodon |
| TRAF2 (1 of 2) | paralogy | Tetraodon |
| TRAF4 | paralogy | Tetraodon |
| trf-1 | paralogy | Worm |
| TRAF2 | paralogy | Xenopus |
| traf6 | paralogy | Xenopus |
| TRAF3 | paralogy | Xenopus |
| TRAF5 | paralogy | Xenopus |
| traf4 | paralogy | Xenopus |
| TRAF2 | paralogy | Zebra finch |
| TRAF5 | paralogy | Zebra finch |
| TRAF6 | paralogy | Zebra finch |
| TRAF3 | paralogy | Zebra finch |
| traf4a | paralogy | Zebrafish |
| TRAF5 (2 of 2) | paralogy | Zebrafish |
| traf6 | paralogy | Zebrafish |
| zgc:92367 | paralogy | Zebrafish |
| TRAF2 | paralogy | Zebrafish |
| traf4b | paralogy | Zebrafish |
| si:dkey-170o10.1 | paralogy | Zebrafish |
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Gene Ontology [+]
| GO id | Name | Ontology type | Evidence |
|---|---|---|---|
| GO:0006461 | protein complex assembly | biological_proccess | TAS |
| GO:0042981 | regulation of apoptosis | biological_proccess | IEA |
| GO:0007165 | signal transduction | biological_proccess | IEA |
| GO:0005515 | protein binding | mollecular_function | IPI |
| GO:0008270 | zinc ion binding | mollecular_function | IEA |
| GO:0005515 | protein binding | mollecular_function | IEA |
| GO:0005737 | cytoplasm | cell_component | TAS |
Check GO Evidence Codes here
KEGG Pathways [+]
Curated Isoforms [+]
| Transcript | Translation |
|---|---|
| OTTHUMT00000053843 * | OTTHUMP00000022000 * |
Info from The Vertebrate Genome Annotation (VEGA) database.
(*) Canonical transcript and translation forms.
Information from other databases [+]
- Gene info from HGNC [?] :12031
- Gene related info from GeneCards [?] : TRAF1
- Ensembl genome browser [?] : ENSG00000056558
- Expression info from Arrayexpress [?] : ENSG00000056558
- Protein expression from Protein Atlas: [?] ENSG00000056558
- Community gene edition from Wikigenes: [?] 7185
- OMIM gene information: 601711
- OMIM disease information:
Click on [?] for more information.
