TRIM39 (Rattus norvegicus)
Description [+]
- Synonyms: TRIM39
- Species: Metazoa;Bilateria;Deuterostoma;Chordata;Vertebrata;Mammalia;Rodentia; Rattus norvegicus
- Short gene description: Tripartite motif-containing protein 39 (RING finger protein 23). [Source:UniProtKB/Swiss-Prot;Acc:Q6MFZ5]
- Family: Null
- Process:
- Pathways:
- Criteria: homology search
- Curator comment: Null
- WIKI: TRIM39-R_norvegicus
Structure & Sequence [+]
Pfam domains:
(Pfam is a large collection of protein families.)
| Source | Domain Name | Start | End |
|---|---|---|---|
| PFAM A | zf-C3HC4 | 29 | 69 |
| PFAM A | zf-B_box | 102 | 143 |
| PFAM A | SPRY | 366 | 491 |
Protein sequence [+]
Trim39 | Rattus norvegicus | 10116 | length:494
MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQTVKRKIRDESLCSQHHEPLSLFCYE
DQEAVCLICAISHTHRAHTVVPMDDATQEYKEKLQKCLEPLEQKLQEITCCKASEERKPG
ELKRLVESRRQQILKEFEELHRRLDEEQQTLLSRLEEEEQDILQRLRENAAHLGDRRRDL
AHLAAEVEGKCLQSGFEMLKVRPLLLCEKVKTMEVTSVSIELEKNFSHFPRQYFALRKIL
KQLIAPLWLLPPADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPQRFTFYPCVLA
TEGFTSGRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWNGDKYAATTT
PFTPLHIKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRK
NAAPLTIRPPTDWE
ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQTVKRKIRDESLCSQHHEPLSLFCYE
DQEAVCLICAISHTHRAHTVVPMDDATQEYKEKLQKCLEPLEQKLQEITCCKASEERKPG
ELKRLVESRRQQILKEFEELHRRLDEEQQTLLSRLEEEEQDILQRLRENAAHLGDRRRDL
AHLAAEVEGKCLQSGFEMLKVRPLLLCEKVKTMEVTSVSIELEKNFSHFPRQYFALRKIL
KQLIAPLWLLPPADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPQRFTFYPCVLA
TEGFTSGRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWNGDKYAATTT
PFTPLHIKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRK
NAAPLTIRPPTDWE
Structure links:
- Smartdomain prediction information: SM00184
- Smartdomain prediction information: SM00336
- Smartdomain prediction information: SM00589
- Smartdomain prediction information: SM00449
- Prosite motif and domain information: PS00518
- Interpro domain information: Q6MFZ5
- PFAM domain and domain family information: Q6MFZ5
Evolution [+]
Explore tree at phylomeDB: Click here.
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Gene Ontology [+]
| GO id | Name | Ontology type | Evidence |
|---|---|---|---|
| GO:0000160 | two-component signal transduction system (phosphorelay) | biological_proccess | IEA |
| GO:0005515 | protein binding | mollecular_function | IEA |
| GO:0008270 | zinc ion binding | mollecular_function | IEA |
| GO:0046872 | metal ion binding | mollecular_function | IEA |
| GO:0042802 | identical protein binding | mollecular_function | IEA |
| GO:0004871 | signal transducer activity | mollecular_function | IEA |
| GO:0005622 | intracellular | cell_component | IEA |
Check GO Evidence Codes here
Information from other databases [+]
- Ensembl genome browser [?] : ENSRNOG00000000785
- Expression info from Arrayexpress [?] : ENSRNOG00000000785
- Protein expression from Protein Atlas: [?] ENSRNOG00000000785
Click on [?] for more information.
